The manuscript explores the complex interplay between groundnut genotypes,salt tolerance and hormonal influence,shedding light on the dynamic responses of three specific groundnut genotypes,KDG-128,TG-37 A and GG-20,to salt treatments and gibberellic acid(GA3).The study encompasses germination,plant growth,total protein content and oil content as key parameters.Through comprehensive analysis,it identifies TG-37 A and KDG-128 as salt-tolerant genotypes,and GG-20 as salt-susceptible genotypes,which highlighting the potential for targeted breeding efforts to develop more resilient groundnut varieties.Moreover,the quantification of protein and oil content under different treatments provides vital data for optimizing nutritional profiles in groundnut cultivars.Principal Component Analysis(PCA) underscores the significance of the first principal component(PC1)in explaining the majority of variance,capturing primary trends and differences in plant length.Analysis of Variance(ANOVA) and hierarchical analysis confirm the presence of statistically significant differences in protein and oil content among the genotypes.Pearson's correlation coefficient matrix analysis reveals strong positive correlations between plant length and protein content,plant length and oil content,and a moderately positive correlation between protein content and oil content.These findings provide valuable insights into groundnut physiology,salt tolerance,and nutritional composition,with implications for future research in sustainable agriculture and crop improvement.
Country bean, Lablab purpureus (L.) is considered one of the most important leguminous crops, but their cultivation under drought stress condition encounters challenges. In this study, an experiment has been conducted among 30 genotypes under drought condition to explore morphological diversity of qualitative and quantitative, biochemical, molecular analysis. The study identified significant variations in eight traits among the genotypes examined, with phenotypic variance exceeding genotypic variance, indicating both genetic and environmental influences. High heritability and genetic advance were observed in primary, secondary, and tertiary branch lengths, suggesting these traits are likely controlled by additive gene effects, making them effective targets for selection. Principal component analysis identified three components that made a substantial contribution, accounting for approximately 73.06% of the overall quantitative variations. Among the quantitative traits, the highest coefficient of variation (CV%) has been found in number of flowers (55.05%). While number of primary branches, primary branch length, number of secondary branches, secondary branch length, number of tertiary branches, tertiary branch length has individually more than 20% of CV%. The genotypes have been grouped into three clusters based on quantitative traits. Analysis of protein reveals that the genotypes of DS28 and DS29 have higher protein content than other genotypes. Dehydrogenase responsive genotypes have been found on DS28 and DS29 from the molecular analysis. The results suggest that the genotypes DS28 and DS29 could contribute as genetic resource of high protein content and DREB responsive, and the eight quantitative traits of 30 genotypes could be used for further breeding programme.
Hepatitis B virus(HBV)infection is a major player in chronic hepatitis B that may lead to the development of hepatocellular carcinoma(HCC).HBV genetics are diverse where it is classified into at least 9 genotypes(A to I)and 1 putative genotype(J),each with specific geographical distribution and possible different clinical outcomes in the patient.This diversity may be associated with the precision medicine for HBV-related HCC and the success of therapeutical approaches against HCC,related to different pathogenicity of the virus and host response.This Editorial discusses recent updates on whether the classification of HBV genetic diversity is still valid in terms of viral oncogenicity to the HCC and its precision medicine,in addition to the recent advances in cellular and molecular biology technologies.
Caecilia H C SukowatiSri JayantiTuryadi TuryadiDavid H MuljonoClaudio Tiribelli
This study evaluated the variation in yellow root cassava (Manihot esculentus Crantz) genotypes and phenotypic relationship for selected postharvest and morphological traits. The trial was established at the Njala Agricultural Research Centre experimental site, Njala, during 2017/2018 cropping season in a randomized complete block design with three replications. Findings showed that the higher the total carotene content (TCC) in yellow flesh cassava genotypes, the longer the rate of postharvest physiological deterioration (PPD). Genotypes TR-0051-TCC/17 and TR-0012-TCC/17 recorded higher TCC (18.9 µg/g and 13.6 µg/g) and longer rate of PPD (4.29 and 3.14), respectively. Genotypes TR-0051-TCC/17, TR-0016-TCC/17, TR-0028-TCC/17, TR-0012-TCC/17 and TR-0020-TCC/17 had the highest TCC values of 18.9 µg/g, 16.09 µg/g, 14.72 µg/g, 13.6 µg/g and 11.23 µg/g with corresponding higher color chart values of 6, 6, 6, 5, and 6, respectively. This suggests the direct dependence of TCC on the root parenchyma color intensity in yellow flesh cassava genotypes. Findings also show a direct relationship between morphological and postharvest traits in yellow flesh cassava genotypes that could be exploited for the genetic improvement of cassava for increased shelf life, nutrition and related quality traits, as well as conservation and utilization of the crop.
Background Studies on genetic variation and combining ability are essential tools to employ the suitable breeding programme,particularly for hybrid production,to exploit the heterosis in cross-pollinated crops like cotton.Thus,combining ability studies in desi cotton(Gossypium arboreum L.)was carried out using 13 diverse parents through diallel mating design,evaluating 78 F,hybrids along with their parents,without reciprocals using Griffing's and Hayman's approaches.Results Genotypes H 509,AC 3265,AKH 496,and PBN 565 exhibited superior per se performance,indicating their potential use as parents in future breeding programs to develop superior hybrids.The general combining ability(GCA)effect of the genotypes revealed that AC 3097 and AKA 13-SP1 were good general combiners for most traits in this study.Genotypes PBS 1127-SP1,AKH 496,H 509,N11-54-31-32,and AKA 13-SP1 exhibited strong combining ability,contributing to a significant specific combining ability(SCA)effect in seven selected crosses(AC 3265×PBS1127-SP1,AKH 496×H 509,AKH 496×AC 3097,PBS 1127-SP1×N11-54-31-32,AC 3216×AKA 13-SP1,H 503×N11-54-31-32,and H 509×AKA 13-SP1)for yield improvement.These crosses showed positive heterosis in a positive direction.Conclusion From the present study,five genotypes(AC 3097,AKA 13-SP1,N11-54-31-32,AC 3265,and H 509)were identified as good general combiners for producing hybrids,and seven combinations showed a promising hybrid for future breeding programs.
X-chromosomal genetic markers are frequently employed in forensic parentage determination owing to their distinctive inheritance patterns.The kinship analysis revealed that two sisters who were not identical twins had identical genotypes on the X chromosome,encompassing 36 X-chromosomal short tandem repeats(X-STRs)and 29 X-chromosomal single-nucleotide polymorphisms(X-SNPs)that spanned the whole X chromosome from the p-telomere to the q-telomere.The identical X-STRs and X-SNPs in the daughters could be the result of linkage or a rare chance of occurrence.This highlights the need for careful analysis and interpretation when dealing with X chromosome markers and that in individual cases,even if two women share an allele at each locus,this does not necessarily mean that they are paternal sisters.The likelihood of random concordance due to maternal alleles must be taken into account.
Background The PACS gene family has been demonstrated to be related to intracellular vesicular trafficking.The phenotypic manifestations caused by the pathogenic variants of PACS include epilepsy,intellectual disability/developmental delay,and malformations,such as facial abnormalities.Methods We identified seven new cases with pathogenic or likely pathogenic PACS variants using next-generation sequencing.Detailed information obtained from these patients was analyzed along with that obtained from previously reported patients.Results With the inclusion of the newly diagnosed cases in this study,103 cases with PACS gene family-related neurological diseases were reported,of which 43 were PACS2-related cases and the remaining were PACSI-related cases.Most patients had seizures,which have been reported to be effectively controlled by several types of anti-seizure medications(ASMs).The most efficacious and frequently prescribed ASMs included sodium valproate(43.3%,13/30),oxcarbazepine/carbamazepine(26.7%,8/30),and levetiracetam(20%,6/30).Almost all patients had intellectual disability/developmental delay.The most common pathogenic missense variants were PACSI p.Arg203Trp and PACS2 p.Glu209Lys.In addition,we report a patient carrying a likely pathogenic copy number variation(CNV)(de novo heterozygous deletion of chr14:105821380-106107443,286 kilobase,destroyed part of the furin-binding region domain and the protein structure after it)with more severe and refractory late-onset epilepsy.Conclusions The clinical phenotypes of the different PACS heterozygous missense variants were similar.The pathogenic variant sites of PACSI and PACS2 were quite limited but located in different regions.A CNV destroying part of the PACS2 gene might also be pathogenic.These findings may provide an important clue for further functional studies on the pathogenic mechanism of neurological disorders related to the PACS gene family.
Han ZhangKai GaoShuang WangYue-Hua ZhangZhi-Xian YangYe WuYu-Wu Jiang
Objective:Xeroderma pigmentosum(XP)is a rare autosomal recessive dermatosis caused by genetic defects of DNA repair.This study was performed to detect and analyze the genes of 2 Uygur patients with XP and their families and assess the patients’phenotypes,which may enrich the understanding of the genetic skin disorder spectrum in Xinjiang area.Methods:We collected the clinical data from 2 patients with XP and peripheral blood samples from the patients and their family members.The patients’DNA was sequenced and detected by Sanger sequencing,and gene mutations were screened.Results:The proband in family 1 presented with brown maculae at the exposure site and squamous cell carcinoma secondary to a facial rash.The proband had a homozygous nucleotide variation of XPC c.2251-2A>G(A change from A to G in the penultimate position of the intron before the 2251 position in the coding region),which was a shear mutation.In this family,both parents were heterozygous,and no similar mutation detected in the sister.In family 2,the proband had scattered black brown spots and papules on the trunk and limbs.and his younger sister was also a patient.The proband and his younger sister had homonucleotide variation of XPA c.631C>T,which was nonsense mutation,resulting in the codon for Arg No.211 being changed into termination codon(p.arg211X),thus terminating the peptide chain synthesis prematurely.All the normal individuals in the two families were heterozygotes,and homozygous mutations occurred in all the patients,which was consistent with the autosomal recessive inheritance.Conclusion:XP is rare in Uygur population.This study expanded the mutation spectrum of XP and provided a basis for early diagnosis,treatment,prognostic prediction,and prenatal genetic consultation.
Yun QiuWei-Jia WangJun-Qin LiangBuwajieer YakeyaPeng WangJing-Zhan ZhangXiao-Jing Kang
